References

A

Abdi, R., Endreny, T., & Nowak, D. (2020). A model to integrate urban river thermal cooling in river restoration. Journal of Environmental Management, 258. doi:10.1016/j.jenvman.2019.110023
Arlinghaus, R., Tillner, R., & Bork, M. (2015). Explaining participation rates in recreational fishing across industrialised countries. Fisheries Management and Ecology, 22(1), 45-55. doi:https://doi.org/10.1111/fme.12075
Armstrong, J. B., Fullerton, A. H., Jordan, C. E., Ebersole, J. L., Bellmore, J. R., Arismendi, I., . . . Reeves, G. H. (2021). The importance of warm habitat to the growth regime of cold-water fishes. Nature Climate Change, 11(4), 354-361. doi:10.1038/s41558-021-00994-y
Armstrong, J. B., & Schindler, D. E. (2013). Going with the flow: Spatial distributions of juvenile coho salmon track an annually shifting mosaic of water temperature. Ecosystems, 16(8), 1429-1441. doi:10.1007/s10021-013-9693-9
Armstrong, J. B., Schindler, D. E., Ruff, C. P., Brooks, G. T., Bentley, K. E., & Torgersen, C. E. (2013). Diel horizontal migration in streams: Juvenile fish exploit spatial heterogeneity in thermal and trophic resources. Ecology, 94(9), 2066-2075. doi:10.1890/12-1200.1
Arora, R., Toffolon, M., Tockner, K., & Venohr, M. (2018).Thermal discontinuities along a lowland river: The importance of urban areas and lakes. Journal of Hydrology, 564, 811-823. doi:10.1016/j.jhydrol.2018.05.066
Arrigoni, A. S., Poole, G. C., Mertes, L. A. K., O'Daniel, S. J., Woessner, W. W., & Thomas, S. A. (2008). (2008). Buffered, lagged, or cooled? Disentangling hyporheic influences on temperature cycles in stream channels. Water Resources Research, 44(9), 1-13. doi:10.1029/2007WR006480
Atlas, W. I., Ban, N. C., Moore, J. W., Tuohy, A. M., Greening, S., Reid, A. J., . . . Connors, K. (2021). Indigenous systems of management for culturally and ecologically resilient Pacific salmon (Oncorhynchus spp.) Fisheries. Bioscience, 71(2), 186-204 doi:10.1093/biosci/biaa144

B

Begon, M., Townsend, C. R., & Harper, J. L. (2006). Ecology - From individuals to ecosystems: Blackwell Publishing Ltd.
Bense, V. F., Person, M. A., Chaudhary, K., You, Y., Cremer, N., & Simon, S. (2008). Thermal anomalies indicate preferential flow along faults in unconsolidated sedimentary aquifers. Geophysical Research Letters, 35(24). doi:https://doi.org/10.1029/2008GL036017
Bergman, I., & Ramqvist, P. H. (2018). Hunters of forests and waters: Late Iron Age and Medieval subsistence and social processes in coastal northern Sweden. Acta Borealia, 35(1), 1-28. doi:10.1080/08003831.2018.1456765
Berman, C. H., & Quinn, T. P. (1991). Behavioural thermoregulation and homing by spring chinook salmon, Oncorhynchus tshawytscha (Walbaum), in the Yakima River. Journal of Fish Biology, 39(3), 301-312. doi:10.1111/j.1095-8649.1991.tb04364.x
Berryman, A. A., & Hawkins, B. A. (2006). The refuge as an integrating concept in ecology and evolution. Oikos, 115(1), 192-196. doi:https://doi.org/10.1111/j.0030-1299.2006.15188.x
Boltaña, S., Sanhueza, N., Aguilar, A., Gallardo-Escarate, C., Arriagada, G., Valdes, J. A., . . . Quiñones, R. A. (2017). Influences of thermal environment on fish growth. Ecology and evolution, 7(17), 6814-6825. doi:10.1002/ece3.3239
Bongaerts, P., Ridgway, T., Sampayo, E. M., & Hoegh-Guldberg, O. (2010). Assessing the ‘deep reef refugia’ hypothesis: focus on Caribbean reefs. Coral Reefs, 29(2), 309-327. doi:10.1007/s00338-009-0581-x
Breau, C., Cunjak, R. A., & Peake, S. J. (2011). Behaviour during elevated water temperatures: can physiology explain movement of juvenile Atlantic salmon to cool water? Journal of Animal Ecology, 80(4), 844-853. doi:10.1111/j.1365-2656.2011.01828.x
Brewitt, K. S., & Danner, E. M. (2014). Spatio-temporal temperature variation influences juvenile steelhead (Oncorhynchus mykiss) use of thermal refuges. Ecosphere, 5(7). doi:10.1890/es14-00036.1
Brewitt, K. S., Danner, E. M., & Moore, J. W. (2017). Hot eats and cool creeks: juvenile Pacific salmonids use mainstem prey while in thermal refuges. Canadian Journal of Fisheries and Aquatic Sciences, 74(10), 1588-1602. doi:10.1139/cjfas-2016-0395
Briggs, M. A., Voytek, E. B., Day-Lewis, F. D., Rosenberry, D. O., & Lane, J. W. (2013). Understanding water column and streambed thermal refugia for endangered mussels in the Delaware River. Environmental Science & Technology, 47(20), 11423-11431. doi:10.1021/es4018893

C

Caldwell, S. H., Kelleher, C., Baker, E. A., & Lautz, L. K. (2019). Relative information from thermal infrared imagery via unoccupied aerial vehicle informs simulations and spatially-distributed assessments of stream temperature. Science of the Total Environment, 661, 364-374. doi:10.1016/j.scitotenv.2018.12.457
Capra, H., Plichard, L., Berge, J., Pella, H., Ovidio, M., McNeil, E., & Lamouroux, N. (2017)Fish habitat selection in a large hydropeaking river: Strong individual and temporal variations revealed by telemetry. Science of the Total Environment, 578 109-120 doi:10.1016/j.scitotenv.2016.10.155
Carlson, A. K., Taylor, W. W., & Hughes, S. M. (2020)The metacoupling framework informs stream salmonid management and governance. Frontiers in Environmental Science, 8 doi:10.3389/fenvs.2020.00027
Casas-Mulet, R., Pander, J., Ryu, D., Stewardson, M. J., & Geist, J. (2020) Unmanned aerial vehicle (UAV)-based thermal infra-red (TIR) and optical imagery reveals multi-spatial scale controls of cold-water areas over a groundwater-dominated riverscape. Frontiers in Environmental Science 8 doi:10.3389/fenvs.2020.00064
Chapman, M., Satterfield, T., & Chan, K. M. A. (2020)How value conflicts infected the science of riparian restoration for endangered salmon habitat in America's Pacific Northwest: Lessons for the application of conservation science to policy Biological Conservation, 244 doi:10.1016/j.biocon.2020.108508
Chen, H. L. Y., Hodges, C. C., & Dymond, R. L. (2021)Modeling watershed-wide bioretention stormwater retrofits to achieve thermal pollution mitigation goals Journal of the American Water Resources Association 57(1), 109-133 doi:10.1111/1752-1688.12894
Cockburn, C., Winter, J., Osterberg, E., Magilligan, F., & Kull, F. J. (2021)Drivers of future streamflow changes across watersheds in the Northeastern United States.
Corey, E., Linnansaari, T., Cunjak, R. A., & Currie, S. (2017) Physiological effects of environmentally relevant, multi-day thermal stress on wild juvenile Atlantic salmon (Salmo salar). Conservation Physiology 5(1), 1-13 doi:10.1093/conphys/cox014
Costigan, K. H., Daniels, M. D., & Dodds, W. K. (2015) Fundamental spatial and temporal disconnections in the hydrology of an intermittent prairie headwater network Journal of Hydrology, 522, 305-316. doi:10.1016/j.jhydrol.2014.12.031

D

Dahlke, F. T., Wohlrab, S., Butzin, M., & Pörtner, H.-O. (2020)Thermal bottlenecks in the life cycle define climate vulnerability of fish. Science 369(6499), 65-70 doi:10.1126/science.aaz3658
Daigle, A., Jeong, D. I., & Lapointe, M. F. (2015) Climate change and resilience of tributary thermal refugia for salmonids in eastern Canadian rivers Hydrological Sciences Journal 60(6), 1044-1063 doi:10.1080/02626667.2014.898121
DFO 2012)Temperature threshold to define management strategies for Atlantic salmon (Salmo salar) fisheries under environmentally stressful conditions. DFO Can. Sci. Advis. Sec. Sci. Advis. Rep.
Dietz, T. (2013)Bringing values and deliberation to science communication. Proceedings of the National Academy of Sciences, 110(supplement_3), 14081-14087 doi:10.1073/pnas.1212740110
Dugdale, S. J. (2016) A practitioner's guide to thermal infrared remote sensing of rivers and streams: recent advances, precautions and considerations. Wiley Interdisciplinary Reviews: Water, 3(2), 251-268 doi:10.1002/wat2.1135
Dugdale, S. J., Bergeron, N. E., & St-Hilaire, A. (2013)Temporal variability of thermal refuges and water temperature patterns in an Atlantic salmon river. Remote Sensing of Environment 136, 358-373 doi:10.1016/j.rse.2013.05.018
Dugdale, S. J., Bergeron, N. E., & St-Hilaire, A. (2015) Spatial distribution of thermal refuges analysed in relation to riverscape hydromorphology using airborne thermal infrared imagery. Remote Sensing of Environment 160, 43-55 doi:10.1016/j.rse.2014.12.021
Dugdale, S. J., Hannah, D. M., & Malcolm, I. A. (2017) River temperature modelling: A review of process-based approaches and future directions. Earth-Science Reviews 175, 97-113 doi:10.1016/j.earscirev.2017.10.009
Dunham, J., Chandler, G., Rieman, B., & Martin, D. (2005) Measuring stream temperature with digital data loggers: a user's guide Gen. Tech. Rep. RMRSGTR-150WWW. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station 15
Dunham, J. B., Angermeier, P. L., Crausbay, S. D., Cravens, A. E., Gosnell, H., McEvoy, J., . . . Sanford, T. (2018)Rivers are social–ecological systems: Time to integrate human dimensions into riverscape ecology and management WIREs Water 5(4) doi:10.1002/wat2.1291
Dzara, J. R., Neilson, B. T., & Null, S. E. (2019)Quantifying thermal refugia connectivity by combining temperature modeling, distributed temperature sensing, and thermal infrared imaging. Hydrology and Earth System Sciences 23(7), 2965-2982 doi:10.5194/hess-23-2965-2019

E

Ebersole, J. L., Liss, W. J., & Frissell, C. A. (2003)Thermal heterogeneity, stream channel morphology, and salmonid abundance in northeastern Oregon streams. Canadian Journal of Fisheries and Aquatic Sciences 60(10), 1266-1280 doi:10.1139/f03-107
Ebersole, J. L., Quinones, R. M., Clements, S., & Letcher, B. H. (2020)Managing climate refugia for freshwater fishes under an expanding human footprint Frontiers in Ecology and the Environment 18(5), 271-280 doi:10.1002/fee.2206
Ebersole, J. L., Wigington, P. J., Leibowitz, S. G., Comeleo, R. L., & Sickle, J. V. (2015)Predicting the occurrence of cold-water patches at intermittent and ephemeral tributary confluences with warm rivers Freshwater Science 34(1), 111-124 doi:10.1086/678127
Elliott, J. M., & Elliott, J. A. (2010)Temperature requirements of Atlantic salmon Salmo salar, brown trout Salmo trutta and Arctic charr Salvelinus alpinus: predicting the effects of climate change Journal of Fish Biology 77(8), 1793-1817 doi:https://doi.org/10.1111/j.1095-8649.2010.02762.x
Enquist, C. A. F., Jackson, S. T., Garfin, G. M., Davis, F. W., Gerber, L. R., Littell, J. A., . . . Shaw, M. R (2017) Foundations of translational ecology Frontiers in Ecology and the Environment, 15(10), 541-550 doi:10.1002/fee.1733
Ernst, A. G., Baldigo, B. P., Calef, F. J., Freehafer, D. A., & Kremens, R. L. (2015)Identifying trout refuges in the Indian and Hudson Rivers in northern New York through airborne thermal infrared remote sensing doi:10.3133/ofr20151078

F

Fitzgerald, A. M., John, S. N., Apgar, T. M., Mantua, N. J., & Martin, B. T. (2021)Quantifying thermal exposure for migratory riverine species: Phenology of Chinook salmon populations predicts thermal stress Global Change Biology 27(3), 536-549 doi:https://doi.org/10.1111/gcb.15450
Frade, P. R., Bongaerts, P., Englebert, N., Rogers, A., Gonzalez-Rivero, M., & Hoegh-Guldberg, O. (2018)Deep reefs of the Great Barrier Reef offer limited thermal refuge during mass coral bleaching Nature Communications 9(1), 3447 doi:10.1038/s41467-018-05741-0
Frechette, D. M., Dugdale, S. J., Dodson, J. J., & Bergeron, N. E. (2018)Understanding summertime thermal refuge use by adult Atlantic salmon using remote sensing, river temperature monitoring, and acoustic telemetry1 Canadian Journal of Fisheries and Aquatic Sciences 75(11), 1999-2010 doi:10.1139/cjfas-2017-0422
Fuller, M. R., Ebersole, J. L., Detenbeck, N. E., Labiosa, R., Leinenbach, P., & Torgersen, C. E. (2021)Integrating thermal infrared stream temperature imagery and spatial stream network models to understand natural spatial thermal variability in streams Journal of Thermal Biology 100, 103028 doi:10.1016/j.jtherbio.2021.103028
Fullerton, A. H., Torgersen, C. E., Lawler, J. J., Faux, R. N., Steel, E. A., Beechie, T. J., . . . Leibowitz, S. G. (2015)Rethinking the longitudinal stream temperature paradigm: region-wide comparison of thermal infrared imagery reveals unexpected complexity of river temperatures Hydrological Processes 29(22), 4719-4737 doi:10.1002/hyp.10506
Fullerton, A. H., Torgersen, C. E., Lawler, J. J., Steel, E. A., Ebersole, J. L., & Lee, S. Y. (2018)Longitudinal thermal heterogeneity in rivers and refugia for coldwater species: effects of scale and climate change Aquatic Sciences 80(3), 1-15 doi:10.1007/s00027-017-0557-9

G

Gårdmark, A., & Huss, M. (2020) Individual variation and interactions explain food web responses to global warming Philosophical Transactions of the Royal Society B: Biological Sciences 375(1814), 20190449 doi:10.1098/rstb.2019.0449
Gaymer, C. F., Stadel, A. V., Ban, N. C., Cárcamo, P. F., Ierna, J., & Lieberknecht, L. M. (2014)Merging top-down and bottom-up approaches in marine protected areas planning: experiences from around the globe Aquatic Conservation: Marine and Freshwater Ecosystems 24(S2), 128-144 doi:10.1002/aqc.2508
Gendaszek, A. S., Dunham, J. B., Torgersen, C. E., Hockman-Wert, D. P., Heck, M. P., Thorson, J., . . . Allai, T. (2020)Land-Cover and Climatic Controls on Water Temperature, Flow Permanence, and Fragmentation of Great Basin Stream Networks. Water 12(7) doi:10.3390/w12071962
Gillooly, J. F., Brown, J. H., West, G. B., Savage, V. M., & Charnov, E. L. (2001) Effects of size and temperature on metabolic rate Science 293(5538), 2248-2251 doi:10.1126/science.1061967
Green, O. O., Garmestani, A. S., van Rijswick, H. F. M. W., & Keessen, A. M. (2013)EU Water governance: striking the right balance between regulatory flexibility and enforcement? Ecology and Society 18(2) doi:10.5751/es-05357-180210
Greer, G., Carlson, S., & Thompson, S. (2019)Evaluating definitions of salmonid thermal refugia using in situ measurements in the Eel River, Northern California Ecohydrology 12(5), eco.2101 doi:10.1002/eco.2101
Griebler, C., & Avramov, M. (2015)Groundwater ecosystem services: a review Freshwater Science 34(1), 355-367 doi:10.1086/679903
Guillen, G. (2003)Klamath river fish die-off September 2002 causative factors of mortality. Report Number AFWO-F-02-03 Arcata, CA: U.S. Fish and Wildlife Service Retrieved from https://www.trrp.net/library/document?id=302
Gutowsky, L. F. G., Harrison, P. M., Martins, E. G., Leake, A., Patterson, D. A., Zhu, D. Z., . . . Cooke, S. J. (2017)Daily temperature experience and selection by adfluvial bull trout (Salvelinus confluentus) Environmental Biology of Fishes 100(10), 1167-1180 doi:10.1007/s10641-017-0634-x
Gvoždík, L. (2018)Just what is the thermal niche? Oikos 127(12), 1701-1710 doi:https://doi.org/10.1111/oik.05563

H

Haddeland, I., Heinke, J., Biemans, H., Eisner, S., Florke, M., Hanasaki, N., . . . Wisser, D. (2014) Global water resources affected by human interventions and climate change Proc Natl Acad Sci U S A, 111(9), 3251-3256 doi:10.1073/pnas.1222475110
Hale, R., & Swearer, S. E. (2016)Ecological traps: current evidence and future directions Proceedings of the Royal Society B: Biological Sciences 283(1824), 20152647 doi:10.1098/rspb.2015.2647
Hare, D. K., Briggs, M. A., Rosenberry, D. O., Boutt, D. F., & Lane, J. W. (2015)A comparison of thermal infrared to fiber-optic distributed temperature sensing for evaluation of groundwater discharge to surface water. Journal of Hydrology 530, 153-166. doi:https://doi.org/10.1016/j.jhydrol.2015.09.059
Hare, D. K., Helton, A. M., Johnson, Z. C., Lane, J. W., & Briggs, M. A. (2021).Continental-scale analysis of shallow and deep groundwater contributions to streams Nature Communications 12(1), 1450 doi:10.1038/s41467-021-21651-0
Harvey, M. C., Hare, D. K., Hackman, A., Davenport, G., Haynes, A. B., Helton, A., . . . Briggs, M. A. (2019)Evaluation of stream and wetland restoration using UAS-based thermal infrared mapping Water 11(8) doi:10.3390/w11081568
Hirsch, S. L. (2020)Anticipating Future Environments Climate Change, Adaptive Restoration, and the Columbia River Basin: University of Washington Press
Hitt, N. P., Snook, E. L., & Massie, D. L. (2017)Brook trout use of thermal refugia and foraging habitat influenced by brown trout Canadian Journal of Fisheries and Aquatic Sciences 74(3), 406-418 doi:10.1139/cjfas-2016-0255
Huntsman, A. G. (1942)Death of salmon and trout with high temperature. Journal of the Fisheries Research Board of Canada 5c(5), 485-501 doi:10.1139/f40-051

K

KarisAllen, J., Mohammed, A., Tamborski, J., Jamieson, R., Danielescu, S., & Kurylyk, B. (2022)Intertidal spring discharge to a coastal ecosystem and impacts of climate change on future groundwater temperature: A multi-method investigation Hydrol. Earth Syst. Sci. Discuss. 2022, 1-34 doi:10.5194/hess-2022-49
KarisAllen, J. J., & Kurylyk, B. L. (2021).Drone‐based characterization of intertidal spring cold‐water plume dynamics. Hydrological Processes, 35(6) doi:10.1002/hyp.14258
Kaya, C. M., Kaeding, L. R., & Burkhalter, D. E. (1977)Use of a cold-water refuge by rainbow and brown trout in a geothermally heated stream Progressive Fish-Culturist 39(1), 37-38
Keefer, M. L., Peery, C. A., & High, B. (2009)Behavioral thermoregulation and associated mortality trade-offs in migrating adult steelhead (Oncorhynchus mykiss): variability among sympatric populations. Canadian Journal of Fisheries and Aquatic Sciences 66(10), 1734-1747 doi:10.1139/F09-131
Keppel, G., Van Niel, K. P., Wardell-Johnson, G. W., Yates, C. J., Byrne, M., Mucina, L., . . . Franklin, S. E. (2012)Refugia: identifying and understanding safe havens for biodiversity under climate change. Global Ecology and Biogeography 21(4), 393-404 doi:10.1111/j.1466-8238.2011.00686.x
Kittinger, J. N., Dowling, A., Purves, A. R., Milne, N. A., & Olsson, P. (2011)Marine protected areas, multiple-agency management, and monumental surprise in the Northwestern Hawaiian islands. Journal of Marine Biology 2011, 1-17 doi:10.1155/2011/241374
Kuhn, J., Casas-Mulet, R., Pander, J., & Geist, J. (2021)Assessing Stream Thermal Heterogeneity and Cold-Water Patches from UAV-Based Imagery: A Matter of Classification Methods and Metrics. Remote Sensing 13(7), 1379-1379 doi:10.3390/rs13071379
Kurle, C. M., Cadotte, M. W., Jones, H. P., Seminoff, J. A., Newton, E. L., & Seo, M. (2022)Co‐designed ecological research for more effective management and conservation. Ecological Solutions and Evidence 3(1) doi:10.1002/2688-8319.12130
Kurylyk, B. L., & MacQuarrie, K. T. B. (2014)A new analytical solution for assessing climate change impacts on subsurface temperature. Hydrological Processes 28(7), 3161-3172 doi:10.1002/hyp.9861
Kurylyk, B. L., MacQuarrie, K. T. B., Linnansaari, T., Cunjak, R. A., & Curry, R. A. (2015)Preserving, augmenting, and creating cold-water thermal refugia in rivers: concepts derived from research on the Miramichi River, New Brunswick (Canada). Ecohydrology 8(6), 1095-1108 doi:10.1002/eco.1566

L

Langford, J., & Skinner, D. (2013) Legislating for sustainable basin management: the story of Australia's Water Act (2007). Water Policy 15(6), 871-894 doi:10.2166/wp.2013.017
Lassalle, G., & Rochard, E. (2009)Impact of twenty-first century climate change on diadromous fish spread over Europe, North Africa and the Middle East. Global Change Biology 15(5), 1072-1089 doi:10.1111/j.1365-2486.2008.01794.x
Lee, K. N. (1999)Appraising adaptive management Ecology and Society 3(2) doi:10.5751/ES-00131-030203
Lee, S.-Y., Fullerton, A. H., Sun, N., & Torgersen, C. E. (2020)Projecting spatiotemporally explicit effects of climate change on stream temperature: A model comparison and implications for coldwater fishes. Journal of Hydrology 588 doi:10.1016/j.jhydrol.2020.125066
Liebich, K. B., Kocik, J. F., & Taylor, W. W. (2018) (2018) Reclaiming a space for diadromous fish in the public psyche and sense of place. Fisheries 43(5), 231-240 doi:10.1002/fsh.10063
Lisi, P. J., & Schindler, D. E. (2015)Wind-driven upwelling in lakes destabilizes thermal regimes of downstream rivers. Limnology and Oceanography 60(1), 169-180 doi:10.1002/lno.10010
Lombard, P. J., Dudley, R. W., Collins, M. J., Saunders, R., & Atkinson, E. (2021)Model estimated baseflow for streams with endangered Atlantic Salmon in Maine, USA. River Research and Applications(June), 1-11 doi:10.1002/rra.3835

M

MacDonald, C., Jones, G. P., & Bridge, T. (2018) Marginal sinks or potential refuges? Costs and benefits for coral-obligate reef fishes at deep range margins Proc Biol Sci 285(1890) doi:10.1098/rspb.2018.1545
Magnuson, J. J., Crowder, L. B., & Patricia, A. M. (1979)Temperature as an ecological resource. American Zoologist 19(1), 331-343
McCullough, D. A. (2011)The impact on coldwater-fish populations of interpretative differences in the application of the United States Clean Water Act 1972 by individual state legislatures. Freshwater Reviews 4(1), 43-79 doi:10.1608/frj-4.1.159
McCullough, D. A., Bartholow, J. M., Jager, H. I., Beschta, R. L., Cheslak, E. F., Deas, M. L., . . . Wurtsbaugh, W. A. (2009)Research in Thermal Biology: Burning Questions for Coldwater Stream Fishes. Reviews in Fisheries Science 17(1), 90-115 doi:10.1080/10641260802590152
Mejia, F. H., Torgersen, C. E., Berntsen, E. K., Maroney, J. R., Connor, J. M., Fullerton, A. H., . . . Lorang, M. S. (2020)Longitudinal, lateral, vertical, and temporal thermal heterogeneity in a large impounded river: implications for cold-water refuges. Remote Sensing 12(9) doi:10.3390/rs12091386
Monk, W. A., Wilbur, N. M., Curry, R. A., Gagnon, R., & Faux, R. N. (2013).Linking landscape variables to cold water refugia in rivers. Journal of Environmental Management 118, 170-176. doi:10.1016/j.jenvman.2012.12.024
Morash, A. J., Speers-Roesch, B., Andrew, S., & Currie, S. (2021)The physiological ups and downs of thermal variability in temperate freshwater ecosystems. Journal of Fish Biology 98(6), 1524-1535. doi:https://doi.org/10.1111/jfb.14655
Moreira, M., Hayes, D. S., Boavida, I., Schletterer, M., Schmutz, S., & Pinheiro, A. (2019)Ecologically-based criteria for hydropeaking mitigation: A review. Science of the Total Environment 657, 1508-1522 doi:https://doi.org/10.1016/j.scitotenv.2018.12.107
Morelli, T. L., Barrows, C. W., Ramirez, A. R., Cartwright, J. M., Ackerly, D. D., Eaves, T. D., . . . Thorne, J. H. (2020)Climate-change refugia: biodiversity in the slow lane. Frontiers in Ecology and the Environment 18(5), 228-234 doi:10.1002/fee.2189
Morelli, T. L., Daly, C., Dobrowski, S. Z., Dulen, D. M., Ebersole, J. L., Jackson, S. T., . . . Beissinger, S. R. (2016)Managing Climate Change Refugia for Climate Adaptation PLoS One 11(8), e0159909 doi:10.1371/journal.pone.0159909
Myers, B. J. E., Lynch, A. J., Bunnell, D. B., Chu, C., Falke, J. A., Kovach, R. P., . . . Paukert, C. P. (2017)Global synthesis of the documented and projected effects of climate change on inland fishes. Reviews in Fish Biology and Fisheries 27(2), 339-361 doi:10.1007/s11160-017-9476-z
Myrvold, K. M., & Kennedy, B. P. (2018)Increasing water temperatures exacerbate the potential for density dependence in juvenile steelhead. Canadian Journal of Fisheries and Aquatic Sciences 75(6), 897-907 doi:10.1139/cjfas-2016-0497

N

Noble, M., Duncan, P., Perry, D., Prosper, K., Rose, D., Schnierer, S., . . . Pittock, J. (2016)Culturally significant fisheries: keystones for management of freshwater social-ecological systems. Ecology and Society 21(2) doi:10.5751/ES-08353-210222

O

O'Sullivan, A. M., Devito, K. J., & Curry, R. A. (2019)The influence of landscape characteristics on the spatial variability of river temperatures. Catena 177, 70-83 doi:10.1016/j.catena.2019.02.006
O'Sullivan, A. M., Linnansaari, T., Leavitt, J., Samways, K. M., Kurylyk, B. L., & Curry, R. A. (2021)The salmon‐peloton: Hydraulic habitat shifts of adult Atlantic salmon ( Salmo salar) due to behavioural thermoregulation. River Research and Applications 38(1), 107-118. doi:10.1002/rra.3872
Ouellet, V., St-Hilaire, A., Dugdale, S. J., Hannah, D. M., Krause, S., & Proulx-Ouellet, S. (2020)River temperature research and practice: Recent challenges and emerging opportunities for managing thermal habitat conditions in stream ecosystems. Science of the Total Environment 736, 139679-139679 doi:10.1016/j.scitotenv.2020.139679

P

Palmer, M. A., Lettenmaier, D. P., Poff, N. L., Postel, S. L., Richter, B., & Warner, R. (2009)Climate Change and River Ecosystems: Protection and Adaptation Options. Environmental Management 44(6), 1053-1068 doi:10.1007/s00267-009-9329-1
Pauly, D. (1995) Anecdotes and the shifting baseline syndrome of fisheries. Trends in Ecology & Evolution 10(10), 430-430 doi:10.1016/s0169-5347(00)89171-5
Poole, G. C., & Berman, C. H. (2001)An ecological perspective on in-stream temperature: natural heat dynamics and mechanisms of human-caused thermal degradation. Environmental Management 27(6), 787-802 doi:10.1007/s002670010188
Poole, G. C., Dunham, J. B., Keenan, D. M., Sauter, S. T., McCullough, D. A., Mebane, C., . . . Deppman, M. (2004)The case for regime-based water quality standards Bioscience 54(2) doi:10.1641/0006-3568(2004)054[0155:Tcfrwq]2.0.Co;2
Price, A. N., Jones, C. N., Hammond, J. C., Zimmer, M. A., & Zipper, S. C. (2021)The Drying Regimes of Non-Perennial Rivers and Streams. Geophysical Research Letters 48(14), e2021GL093298. doi:https://doi.org/10.1029/2021GL093298

Q

Quaempts, E. J., Jones, K. L., O'Daniel, S. J., Beechie, T. J., & Poole, G. C. (2018) Aligning environmental management with ecosystem resilience: a First Foods example from the Confederated Tribes of the Umatilla Indian Reservation, Oregon, USA. Ecology and Society 23(2) doi:10.5751/es-10080-230229

R

Rahel, F. J., & Olden, J. D. (2008)Assessing the Effects of Climate Change on Aquatic Invasive Species. Conservation Biology 22(3) 521-533 doi:https://doi.org/10.1111/j.1523-1739.2008.00950.x
Reid, A. J., Eckert, L. E., Lane, J. F., Young, N., Hinch, S. G., Darimont, C. T., . . . Marshall, A. (2021)“Two-Eyed Seeing”: An Indigenous framework to transform fisheries research and management. Fish and Fisheries 22(2), 243-261. doi:10.1111/faf.12516
Reid, I. S. (2007)Influence of motorboat use on thermal refuges and implications to salmonid physiology in the Lower Rogue River, Oregon. North American Journal of Fisheries Management 27(4), 1162-1173. doi:10.1577/m06-061.1
Reside, A. E., Briscoe, N. J., Dickman, C. R., Greenville, A. C., Hradsky, B. A., Kark, S., . . . Fisher, D. O. (2019)Persistence through tough times: fixed and shifting refuges in threatened species conservation. Biodiversity and Conservation 28(6), 1303-1330 doi:10.1007/s10531-019-01734-7
Richter, A., & Kolmes, S. A. (2005) (2005)Maximum temperature limits for Chinook, Coho, and Chum salmon, and Steelhead trout in the Pacific Northwest. Reviews in Fisheries Science 13, 23 - 49
Rosenberry, D. O., Briggs, M. A., Voytek, E. B., & Lane, J. W. (2016)Influence of groundwater on distribution of dwarf wedgemussels (Alasmidonta heterodon) in the upper reaches of the Delaware River, northeastern USA. Hydrol. Earth Syst. Sci. 20(10), 4323-4339. doi:10.5194/hess-20-4323-2016
Rubenson, E. S., & Olden, J. D. (2017)Dynamism in the upstream invasion edge of a freshwater fish exposes range boundary constraints. Oecologia 184(2), 453-467 doi:10.1007/s00442-017-3885-5
Ryfe, D. M. (2002)The Practice of Deliberative Democracy: A Study of 16 Deliberative Organizations. Political Communication 19(3), 359-377 doi:10.1080/01957470290055547

S

Saadi, A. M., Msilini, A., Charron, C., St-Hilaire, A., & Ouarda, T. B. M. J. (2022).Estimation of the area of potential thermal refuges using generalized additive models and multivariate adaptive regression splines: A case study from the Ste-Marguerite River. River Research and Applications 38(1), 23-35. doi:https://doi.org/10.1002/rra.3886
Satterfield, T., Gregory, R., Klain, S., Roberts, M., & Chan, K. M. (2013)Culture, intangibles and metrics in environmental management. Journal of Environmental Management 117, 103-114. doi:https://doi.org/10.1016/j.jenvman.2012.11.033
Snyder, M. N., Schumaker, N. H., Dunham, J. B., Keefer, M. L., Leinenbach, P., Brookes, A., . . . Ebersole, J. L. (2020)Assessing contributions of cold-water refuges to reproductive migration corridor conditions for adult salmon and steelhead trout in the Columbia River, USA. Journal of Ecohydraulics 1-13 doi:10.1080/24705357.2020.1855086
Snyder, M. N., Schumaker, N. H., Ebersole, J. L., Dunham, J. B., Comeleo, R. L., Keefer, M. L., . . . Keenan, D. (2019)Individual based modeling of fish migration in a 2-D river system: model description and case study. Landscape Ecology 34(4), 737-754 doi:10.1007/s10980-019-00804-z
Soga, M., & Gaston, K. J. (2018)Shifting baseline syndrome: causes, consequences, and implications. Frontiers in Ecology and the Environment 16(4), 222-230. doi:10.1002/fee.1794
Stahl, A. T., Fremier, A. K., & Cosens, B. A. (2020)Mapping legal authority for terrestrial conservation corridors along streams. Conservation Biology, 34(4), 943-955. doi:10.1111/cobi.13484
Steel, E. A., Beechie, T. J., Torgersen, C. E., & Fullerton, A. H. (2017).Envisioning, quantifying, and managing thermal regimes on river networks. Bioscience 67(6), 506-522. doi:10.1093/biosci/bix047
Sullivan, C. J., Vokoun, J. C., Helton, A. M., Briggs, M. A., & Kurylyk, B. L. (2021).An ecohydrological typology for thermal refuges in streams and rivers. Ecohydrology 14(5). doi:10.1002/eco.2295
Svanberg, I., & Locker, A. (2020)Ethnoichthyology of freshwater fish in Europe: a review of vanishing traditional fisheries and their cultural significance in changing landscapes from the later medieval period with a focus on northern Europe. J Ethnobiol Ethnomed 16(1), 68. doi:10.1186/s13002-020-00410-3

T

Thurow, R. F., Copeland, T., & Oldemeyer, B. N. (2019).Wild salmon and the shifting baseline syndrome: application of archival and contemporary redd counts to estimate historical Chinook salmon (Oncorhynchus tshawytscha) production potential in the central Idaho wilderness. Canadian Journal of Fisheries and Aquatic Sciences 77(4), 651-665 doi:10.1139/cjfas-2019-0111
Tonolla, D., Acuña, V., Uehlinger, U., Frank, T., & Tockner, K. (2010).Thermal heterogeneity in river floodplains. Ecosystems 13(5), 727-740 doi:10.1007/s10021-010-9350-5
Torgersen, C. E., Ebersole, J. L., & Keenan, D. M. (2012)Primer for identifying cold-water refuges to protect and restore thermal diversity in riverine landscapes. U.S. Environmental Protection Agency. EPA 910-C-12-001 (EPA 910-C-12-001). Seattle, WA, USA:
Torgersen, C. E., Price, D., Li, H., & McIntosh, B. (1999)Multiscale thermal refugia and stream habitat associations of Chinook salmon in northeastern Oregon. Ecological Applications 9(1), 301-319. doi:10.1890/1051-0761(1999)009[0301:Mtrash]2.0.Co;2

V

Vaccaro, J. J., & Maloy, K. J. (2006)A thermal profile method to identify potential ground-water discharge areas and preferred salmonid habitats for long river reaches: U.S. Geological Survey Scientific Investigations Report 2006-5136.
van Kirk, R. W., Contor, B. A., Morrisett, C. N., Null, S. E., & Loibman, A. S. (2020)Potential for managed aquifer recharge to enhance fish habitat in a regulated river. Water 12(3), 673.
van Vliet, M. T. H., Franssen, W. H. P., Yearsley, J. R., Ludwig, F., Haddeland, I., Lettenmaier, D. P., & Kabat, P. (2013). Global river discharge and water temperature under climate change. Global Environmental Change 23(2), 450-464. doi:10.1016/j.gloenvcha.2012.11.002
van Vliet, M. T. H., Ludwig, F., & Kabat, P. (2013)Global streamflow and thermal habitats of freshwater fishes under climate change. Climatic Change 121(4), 739-754 doi:10.1007/s10584-013-0976-0
Vander Vorste, R., Obedzinski, M., Nossaman Pierce, S., Carlson, S. M., & Grantham, T. E. (2020).Refuges and ecological traps: Extreme drought threatens persistence of an endangered fish in intermittent streams. Global Change Biology 26(7), 3834-3845 doi:https://doi.org/10.1111/gcb.15116
Verhoeven, J. T. A., Soons, M. B., Janssen, R., & Omtzigt, N. (2008).An Operational Landscape Unit approach for identifying key landscape connections in wetland restoration. Journal of Applied Ecology 45(5), 1496-1503. doi:10.1111/j.1365-2664.2008.01534.x

W

Walker, C. M., Whigham, D. F., Bentz, I. S., Argueta, J. M., King, R. S., Rains, M. C., . . . Field, C. J. (2021).Linking landscape attributes to salmon and decision-making in the southern Kenai Lowlands, Alaska, USA. Ecology and Society 26(1) doi:10.5751/es-11798-260101
Walsworth, T. E., Schindler, D. E., Colton, M. A., Webster, M. S., Palumbi, S. R., Mumby, P. J., . . . Pinsky, M. L. (2019)Management for network diversity speeds evolutionary adaptation to climate change. Nature Climate Change 9, 632-636.
Walton, I. (1653) The compleat angler. Oxford: Clarendon Press.
Wang, T., Kelson, S. J., Greer, G., Thompson, S. E., & Carlson, S. M. (2020).Tributary confluences are dynamic thermal refuges for a juvenile salmonid in a warming river network. River Research and Applications 36(7), 1076-1086. doi:10.1002/rra.3634
Wawrzyniak, V., Piégay, H., Allemand, P., Vaudor, L., Goma, R., & Grandjean, P. (2016). Effects of geomorphology and groundwater level on the spatio-temporal variability of riverine cold water patches assessed using thermal infrared (TIR) remote sensing. Remote Sensing of Environment 175, 337-348 doi:10.1016/j.rse.2015.12.050
Wawrzyniak, V., Piégay, H., Allemand, P., Vaudor, L., & Grandjean, P. (2013)Prediction of water temperature heterogeneity of braided rivers using very high resolution thermal infrared (TIR) images. International Journal of Remote Sensing 34(13), 4812-4831 doi:10.1080/01431161.2013.782113
Welch, H., Brodie, S., Jacox, M. G., Bograd, S. J., & Hazen, E. L. (2020).Decision-support tools for dynamic management. Conservation Biology 34(3), 589-599 doi:https://doi.org/10.1111/cobi.13417
Wenger, S. J., Isaak, D. J., Luce, C. H., Neville, H. M., Fausch, K. D., Dunham, J. B., . . . Williams Jack, E. (2011). Flow regime, temperature, and biotic interactions drive differential declines of trout species under climate change. Proceedings of the National Academy of Sciences 108(34), 14175-14180 doi:10.1073/pnas.1103097108
Wenning, R. (2020)The State of World Fisheries and Aquaculture (Sofia) 2020 Report. Integrated Environmental Assessment and Management, 16(5), 800-801 doi:10.4060/ca9229en
White, S. L., Kline, B. C., Hitt, N. P., & Wagner, T. (2019)Individual behaviour and resource use of thermally stressed brook trout Salvelinus fontinalis portend the conservation potential of thermal refugia. Journal of Fish Biology 95(4), 1061-1071 doi:10.1111/jfb.14099
Whittier, J. B., Westhoff, J. T., Paukert, C. P., & Rotman, R. M. (2020)Use of Multiple Temperature Logger Models Can Alter Conclusions. Water 12(3) doi:10.3390/w12030668
Wilbur, N. M., O'Sullivan, A. M., MacQuarrie, K. T. B., Linnansaari, T., & Curry, R. A. (2020) (2020)Characterizing physical habitat preferences and thermal refuge occupancy of brook trout (Salvelinus fontinalis) and Atlantic salmon (Salmo salar) at high river temperatures. River Research and Applications(May 2019), 1-15 doi:10.1002/rra.3570
Williams, B. K. (2011) (2011)Adaptive management of natural resources--framework and issues. Journal of Environmental Management, 92(5), 1346-1353 doi:10.1016/j.jenvman.2010.10.041
Woelfle-Erskine, C. (2022)Underflows: Queer Trans Ecologies and River Justice. Seattle, WA: University of Washington Press.
Woodward, G., Perkins, D. M., & Brown, L. E. (2010).Climate change and freshwater ecosystems: impacts across multiple levels of organization. Philosophical Transactions of the Royal Society Biological Sciences, 365(1549), 2093-2106. doi:10.1098/rstb.2010.0055
Woolnough, D. A., Downing, J. A., & Newton, T. J. (2009) Fish movement and habitat use depends on water body size and shape. Ecology of Freshwater Fish, 18(1), 83-91 doi:https://doi.org/10.1111/j.1600-0633.2008.00326.x

Y

Yu, P.-L. (2015)Rivers, Fish, and the People: Tradition, Science, and Historical Ecology of Fisheries in the American West Logan, UT University of Utah Press.

Z

Zheng, T., Sun, S., Liu, H., Xia, Q., & Zong, Q. (2017)Optimal control of reservoir release temperature through selective withdrawal intake at hydropower dam. Water Science and Technology: Water Supply, 17(1), 279-299 doi:10.2166/ws.2016.133
Zolezzi, G., Siviglia, A., Toffolon, M., & Maiolini, B. (2011)Thermopeaking in Alpine streams: event characterization and time scales Ecohydrology, 4(4), 564-576 doi:https://doi.org/10.1002/eco.132